PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_198230_yrna.t1
Common NameSOVF_198230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 463aa    MW: 50270.8 Da    PI: 8.7094
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_198230_yrna.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17145194155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sp_198230_yrna.t1 145 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 194
                        78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-9145194IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-15145202IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-16146202IPR001471AP2/ERF domain
CDDcd000183.88E-11146204No hitNo description
SMARTSM003801.2E-31146208IPR001471AP2/ERF domain
PROSITE profilePS5103217.82146202IPR001471AP2/ERF domain
CDDcd000182.23E-11238283No hitNo description
SuperFamilySSF541716.02E-6238282IPR016177DNA-binding domain
SMARTSM003804.1E-11239287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MNDEGSATNT ELSGTSSASS LVNATAEESP ISGAGEFDFF SKHSSADVSP FVTRQLFPMN  60
EGDNGGGSVG YDGGGDGTRE MELLRLGSSS STPRSMPTNH NSNSNQWLNL SVLGSGPGSG  120
VGTEQQNNAK QQVRRSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA  180
AARAYDRAAI KFRGVDADIN FTIADYEDDM KQQMKNLSKE EFVHILRRQS TGFSRGSSRY  240
RGVTLHKCGR WEARMGQFLG KKAYDKAAIQ CNGREAVTNF ESSSYQGQIP IMQPNNQGDG  300
QNLDLNLGIS ITIDKGAGES QPHHPPLHLP NGNWPANGSY FIPGAPQLYG QPLASRQSTP  360
MWSGLPPGRP ATYEERVSDQ QKLEAIAGSA RLPNWGWYMQ NQGGQGGGSG GTANQVQQLS  420
NAASSGFSSF STTTTSSANY PFTTLHNDFH NNNNNNNNHT QGR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693090.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X3
SwissprotQ9SK031e-91RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0K9QBF40.0A0A0K9QBF4_SPIOL; Uncharacterized protein
STRINGPOPTR_0008s04490.11e-113(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.25e-84related to AP2.7